PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KCA5D
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 889aa    MW: 97914.9 Da    PI: 7.3135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KCA5DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-18331430198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+l+ sd+++ grlvlpkk+ae++   ++++e+  l++ d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+
  Araip.KCA5D 331 FQKTLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGKLVM 426
                  99**************************555566778***************9989999999***9.********************766.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Araip.KCA5D 427 GFRK 430
                  7776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.89E-20328430IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-31328440IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-22329430No hitNo description
SMARTSM010197.8E-22331432IPR003340B3 DNA binding domain
PfamPF023628.6E-16331430IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18331432IPR003340B3 DNA binding domain
PROSITE profilePS5105013.697559609IPR011124Zinc finger, CW-type
PfamPF074964.6E-12564606IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MASAAASVSS SSLPSSGFCY NPECKELKSQ IPKKGWRLRS GDRAELCDRC GFCETFHLNT  60
SGWRNCETCR KRIHCGCIVS DNSFMLLDPG GVECNVCAKE HHMSSTRPWS QSFCSNLSLR  120
LRDISTNNWN QLAGSGPVPW KQAPSLYNSV SSSNLQPGVA SLVELTHKLG KIYGNERLPD  180
FSLGKKNENF PGISNWNTKL ESQEIMLVNG AMNEDKPSSC LNLCQQSSSV KEDSSPQPFA  240
LPVPYASPNE RNGQPGGNQL QQTPPAPLGK QYSGTVHLSL DTSGETQVRN GRPRVDARGR  300
SQLLPRYWPR CTDQELQQIS IDSNSVITPL FQKTLSASDA GRIGRLVLPK KCAEAYFPPI  360
SQPEGLPLKI LDAKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRLEP  420
EGKLVMGFRK ASTATQSDQD NEANKTGNGH STIGEVEMAD PSSWSKVDKS GYIAKEALGS  480
KSSISRKRKS SILGSKSKRL KIENEDLIEL KITWQEAQGL LRPPPDHVPS IVVIEGFEFE  540
EYEDAPVLGK PTIFTTSNEG EKIQWAQCEN CLKWRKLPAS AILHSKWTCS DNSWDPERSS  600
CSVAQELTAE ELENLLPSCN SGFDVDSFFR SNVLNCFSVI SKKMKATKQE TDNFDAMEGL  660
DTLANLAILG EDESLPTSTQ VTTKHPRHRP GCSCIVCIQP PSGKGPKHKQ TCTCTVCSTV  720
KRRFLTLQQK REKKQTEKAE TIRKRQQPPP PGQSAEIVIE DDSLPCSNAG DSSPNPNKDG  780
NGGSDDDPNR IKSSNLPFKG QIDLNIQPER EEELSPRSDS GGMKALLDGT ERHLRQLNIL  840
NSGDADSSGS QSKGVGDETR EQKLSNGVVL GNNSHNSDRE LVQPLTMNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-1433041713102DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1484489SRKRKS
2486500KRKSSILGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956278.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLI1MEA80.0I1MEA8_SOYBN; Uncharacterized protein
STRINGGLYMA15G07350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1